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Manual_Chromsome_Segmentor.ijm (2.22 kB)
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image_masker.m (0.43 kB)
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line_drawer.m (1.07 kB)
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matrix_rotator.m (0.83 kB)
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montage_maker.m (0.47 kB)
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SUP_Plot_maker_Double_Hump.m (3.07 kB)
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Uhlman_Main.m (7.83 kB)
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Uhlman_Processing_Total.m (15.52 kB)
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border_finder.m (1.35 kB)
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DoubleGaussFit.m (0.96 kB)
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file_importer.m (0.32 kB)
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Image_Format_Check.m (0.54 kB)
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12 files

Chromatid Arm Dimension finder

software
posted on 2022-03-25, 15:36 authored by Todd FallesenTodd Fallesen, Frank UhlmannFrank Uhlmann, Yasutaka KakuiYasutaka Kakui
These are the files to run the Uhlman Chromosome arm dimension finder. There are two main Matlab files. Uhlman_main.m does the segmentation and initial fitting of a sum of two gaussians to the intensity plot of each row in the image.

Uhlman_Processing_Total.m has all the filtering and data processing functions in it.

Uhlman_main.m is run first. They are separated so that you don't have to re-run the segmentation every time just to vary filtering parameters.

The Manual_Chromsome_Segmentor.ijm is to simply crop the chromosomes.

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