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Chromatid Arm Dimension finder

These are the files to run the Uhlman Chromosome arm dimension finder. There are two main Matlab files. Uhlman_main.m does the segmentation and initial fitting of a sum of two gaussians to the intensity plot of each row in the image.

Uhlman_Processing_Total.m has all the filtering and data processing functions in it.

Uhlman_main.m is run first. They are separated so that you don't have to re-run the segmentation every time just to vary filtering parameters.

The Manual_Chromsome_Segmentor.ijm is to simply crop the chromosomes.

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