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A Sanger sequencing protocol for SARS-CoV-2 S-gene.

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posted on 03.11.2021, 11:11 by Rodney S Daniels, Ruth Harvey, Burcu Ermetal, Zheng Xiang, Monica Galiano, Lorin Adams, John W McCauley
We describe a Sanger sequencing protocol for SARS-CoV-2 S-gene the Spike (S)-glycoprotein product of which, composed of receptor-binding (S1) and membrane fusion (S2) segments, is the target of vaccines used to combat COVID-19. The protocol can be used in laboratories with basic Sanger sequencing capabilities and allows rapid "at source" screening for SARS-CoV-2 variants, notably those of concern. The protocol has been applied for surveillance, with clinical specimens collected in either nucleic acid preservation lysis-mix or virus transport medium, and research involving cultured viruses, and can yield data of public health importance in a timely manner.

Funding

Crick (Grant ID: 10030, Grant title: McCauley FC001030)

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